Skip to main content
Back to top
Ctrl
+
K
Version 0.10.1
made at the
N² Lab
API Documentation
Working with Neo Block Data Structures
Examples
System Settings
Light
Dark
GitHub
API Documentation
Working with Neo Block Data Structures
Examples
System Settings
Light
Dark
GitHub
Collapse Sidebar
Expand Sidebar
Section Navigation
API Modules
MyoGen Core
set_random_seed
load_nmodl_mechanisms
Simulator Module
RecruitmentThresholds
myogen.simulator.RecruitmentThresholds.__init__
_Pool
myogen.simulator.neuron.populations._Pool.__init__
myogen.simulator.neuron.populations._Pool.get_initialization_data
AlphaMN__Pool
myogen.simulator.neuron.populations.AlphaMN__Pool.__init__
myogen.simulator.neuron.populations.AlphaMN__Pool.get_initialization_data
DescendingDrive__Pool
myogen.simulator.neuron.populations.DescendingDrive__Pool.__init__
myogen.simulator.neuron.populations.DescendingDrive__Pool.get_initialization_data
AffIa__Pool
myogen.simulator.neuron.populations.AffIa__Pool.__init__
myogen.simulator.neuron.populations.AffIa__Pool.get_initialization_data
AffII__Pool
myogen.simulator.neuron.populations.AffII__Pool.__init__
myogen.simulator.neuron.populations.AffII__Pool.get_initialization_data
AffIb__Pool
myogen.simulator.neuron.populations.AffIb__Pool.__init__
myogen.simulator.neuron.populations.AffIb__Pool.get_initialization_data
GII__Pool
myogen.simulator.neuron.populations.GII__Pool.__init__
myogen.simulator.neuron.populations.GII__Pool.get_initialization_data
GIb__Pool
myogen.simulator.neuron.populations.GIb__Pool.__init__
myogen.simulator.neuron.populations.GIb__Pool.get_initialization_data
Network
myogen.simulator.neuron.network.Network.__init__
myogen.simulator.neuron.network.Network.connect
myogen.simulator.neuron.network.Network.connect_from_external
myogen.simulator.neuron.network.Network.connect_one_to_one
myogen.simulator.neuron.network.Network.connect_to_muscle
myogen.simulator.neuron.network.Network.get_connections
myogen.simulator.neuron.network.Network.get_netcons
myogen.simulator.neuron.network.Network.print_network
myogen.simulator.neuron.network.Network.setup_spike_recording
SimulationRunner
myogen.simulator.neuron.simulation_runner.SimulationRunner.__init__
myogen.simulator.neuron.simulation_runner.SimulationRunner.get_model_outputs
myogen.simulator.neuron.simulation_runner.SimulationRunner.run
myogen.simulator.neuron.simulation_runner.SimulationRunner.set_model_outputs
Muscle
myogen.simulator.Muscle.__init__
myogen.simulator.Muscle.assign_mfs2mns
myogen.simulator.Muscle.distribute_innervation_centers
myogen.simulator.Muscle.generate_muscle_fiber_centers
myogen.simulator.Muscle.resulting_fiber_assignment
myogen.simulator.Muscle.assignment
myogen.simulator.Muscle.innervation_center_positions__mm
myogen.simulator.Muscle.muscle_border__mm
myogen.simulator.Muscle.muscle_fiber_centers__mm
myogen.simulator.Muscle.muscle_fiber_conduction_velocities__mm_per_s
myogen.simulator.Muscle.muscle_fiber_diameters__mm
myogen.simulator.Muscle.number_of_muscle_fibers
myogen.simulator.Muscle.recruitment_thresholds
myogen.simulator.Muscle.resulting_innervation_areas__mm2
myogen.simulator.Muscle.resulting_number_of_innervated_fibers
HillModel
myogen.simulator.neuron.muscle.HillModel.__init__
myogen.simulator.neuron.muscle.HillModel.add_spike
myogen.simulator.neuron.muscle.HillModel.create_default_muscle_parameters
myogen.simulator.neuron.muscle.HillModel.integrate
myogen.simulator.neuron.muscle.HillModel.F0
myogen.simulator.neuron.muscle.HillModel.L0
myogen.simulator.neuron.muscle.HillModel.motor_unit_forces
myogen.simulator.neuron.muscle.HillModel.muscle_acceleration
myogen.simulator.neuron.muscle.HillModel.muscle_force
myogen.simulator.neuron.muscle.HillModel.muscle_length
myogen.simulator.neuron.muscle.HillModel.muscle_torque
myogen.simulator.neuron.muscle.HillModel.muscle_velocity
myogen.simulator.neuron.muscle.HillModel.signed_muscle_torque
myogen.simulator.neuron.muscle.HillModel.time_vector
myogen.simulator.neuron.muscle.HillModel.type1_activation
myogen.simulator.neuron.muscle.HillModel.type2_activation
SpindleModel
myogen.simulator.neuron.proprioception.SpindleModel.__init__
myogen.simulator.neuron.proprioception.SpindleModel.create_default_spindle_parameters
myogen.simulator.neuron.proprioception.SpindleModel.integrate
myogen.simulator.neuron.proprioception.SpindleModel.bag1_activation
myogen.simulator.neuron.proprioception.SpindleModel.bag2_activation
myogen.simulator.neuron.proprioception.SpindleModel.chain_activation
myogen.simulator.neuron.proprioception.SpindleModel.intrafusal_tensions
myogen.simulator.neuron.proprioception.SpindleModel.primary_afferent_firing__Hz
myogen.simulator.neuron.proprioception.SpindleModel.secondary_afferent_firing__Hz
myogen.simulator.neuron.proprioception.SpindleModel.time_vector
GolgiTendonOrganModel
myogen.simulator.neuron.proprioception.GolgiTendonOrganModel.__init__
myogen.simulator.neuron.proprioception.GolgiTendonOrganModel.create_default_gto_parameters
myogen.simulator.neuron.proprioception.GolgiTendonOrganModel.create_gto_parameters_for_muscle
myogen.simulator.neuron.proprioception.GolgiTendonOrganModel.integrate
myogen.simulator.neuron.proprioception.GolgiTendonOrganModel.ib_afferent_firing__Hz
JointDynamics
myogen.simulator.neuron.joint_dynamics.JointDynamics.__init__
myogen.simulator.neuron.joint_dynamics.JointDynamics.get_state
myogen.simulator.neuron.joint_dynamics.JointDynamics.integrate
myogen.simulator.neuron.joint_dynamics.JointDynamics.reset
myogen.simulator.neuron.joint_dynamics.JointDynamics.angle__deg
ForceModel
myogen.simulator.ForceModel.__init__
myogen.simulator.ForceModel.generate_force
myogen.simulator.ForceModel.contraction_times__samples
myogen.simulator.ForceModel.peak_twitch_forces__unitless
myogen.simulator.ForceModel.twitch_list
myogen.simulator.ForceModel.twitch_mat
MuscleGeometry
myogen.simulator.core.force.MuscleGeometry.__init__
myogen.simulator.core.force.MuscleGeometry.origin_coords
myogen.simulator.core.force.MuscleGeometry.insertion_coords
myogen.simulator.core.force.MuscleGeometry.optimal_length__cm
myogen.simulator.core.force.MuscleGeometry.max_length_change__cm
JointGeometry
myogen.simulator.core.force.JointGeometry.__init__
myogen.simulator.core.force.JointGeometry.center_coords
myogen.simulator.core.force.JointGeometry.radius__cm
myogen.simulator.core.force.JointGeometry.range_of_motion__degrees
JointBiomechanics
myogen.simulator.core.force.JointBiomechanics.__init__
myogen.simulator.core.force.JointBiomechanics.compute_joint_torque
myogen.simulator.core.force.JointBiomechanics.compute_muscle_length
myogen.simulator.core.force.JointBiomechanics.get_biomechanical_summary
myogen.simulator.core.force.JointBiomechanics.get_moment_arm
myogen.simulator.core.force.JointBiomechanics.get_muscle_length_trajectory
SurfaceElectrodeArray
myogen.simulator.SurfaceElectrodeArray.__init__
myogen.simulator.SurfaceElectrodeArray.get_H_sf
myogen.simulator.SurfaceElectrodeArray.electrode_positions
myogen.simulator.SurfaceElectrodeArray.num_channels
myogen.simulator.SurfaceElectrodeArray.pos_theta
myogen.simulator.SurfaceElectrodeArray.pos_z
IntramuscularElectrodeArray
myogen.simulator.IntramuscularElectrodeArray.__init__
myogen.simulator.IntramuscularElectrodeArray.calc_observation_points
myogen.simulator.IntramuscularElectrodeArray.rodrigues_rot
myogen.simulator.IntramuscularElectrodeArray.rotate_and_translate
myogen.simulator.IntramuscularElectrodeArray.set_linear_trajectory
myogen.simulator.IntramuscularElectrodeArray.set_position
myogen.simulator.IntramuscularElectrodeArray.traj_mixing_fun
myogen.simulator.IntramuscularElectrodeArray.traj_mixing_mat
myogen.simulator.IntramuscularElectrodeArray.differential_matrix
myogen.simulator.IntramuscularElectrodeArray.electrode_positions
myogen.simulator.IntramuscularElectrodeArray.initial_positions
myogen.simulator.IntramuscularElectrodeArray.num_channels
myogen.simulator.IntramuscularElectrodeArray.trajectory_transforms
SurfaceEMG
myogen.simulator.SurfaceEMG.__init__
myogen.simulator.SurfaceEMG.add_noise
myogen.simulator.SurfaceEMG.simulate_muaps
myogen.simulator.SurfaceEMG.simulate_surface_emg
myogen.simulator.SurfaceEMG.muaps__Block
myogen.simulator.SurfaceEMG.noisy_surface_emg__Block
myogen.simulator.SurfaceEMG.spike_train__Block
myogen.simulator.SurfaceEMG.surface_emg__Block
IntramuscularEMG
myogen.simulator.IntramuscularEMG.__init__
myogen.simulator.IntramuscularEMG.add_noise
myogen.simulator.IntramuscularEMG.simulate_intramuscular_emg
myogen.simulator.IntramuscularEMG.simulate_muaps
myogen.simulator.IntramuscularEMG.intramuscular_emg__Block
myogen.simulator.IntramuscularEMG.muaps__Block
myogen.simulator.IntramuscularEMG.noisy_intramuscular_emg__Block
myogen.simulator.IntramuscularEMG.spike_train__Block
Utils Module
create_ramp_current
create_step_current
create_sinusoidal_current
create_sawtooth_current
create_trapezoid_current
inject_currents_into_populations
inject_currents_and_simulate_spike_trains
ContinuousSaver
myogen.utils.continuous_saver.ContinuousSaver.__init__
myogen.utils.continuous_saver.ContinuousSaver.finalize
myogen.utils.continuous_saver.ContinuousSaver.record_spike
myogen.utils.continuous_saver.ContinuousSaver.record_step
convert_chunks_to_neo
export_to_nwb
export_simulation_to_nwb
validate_nwb
plot_raster_spikes
plot_membrane_potentials
plot_muscle_dynamics
plot_antagonist_muscle_comparison
plot_spindle_dynamics
plot_gto_dynamics
Quantity__s
Quantity__ms
Quantity__rad
Quantity__deg
Quantity__mV
Quantity__uV
Quantity__nA
Quantity__uS
Quantity__S_per_m
Quantity__Hz
Quantity__pps
Quantity__mm
Quantity__m
Quantity__mm2
Quantity__per_mm2
Quantity__m_per_s
Quantity__mm_per_s
CURRENT__AnalogSignal
FORCE__AnalogSignal
SPIKE_TRAIN__Block
SURFACE_MUAP__Block
SURFACE_EMG__Block
INTRAMUSCULAR_MUAP__Block
INTRAMUSCULAR_EMG__Block
CORTICAL_INPUT__MATRIX
RECRUITMENT_THRESHOLDS__ARRAY
JOINT_ANGLE__ARRAY
MOMENT_ARM__MATRIX
API Documentation
Simulator Module
JointGeometry
myogen.simulator.core.force.JointGeometry.radius__cm
myogen.simulator.core.force.JointGeometry.radius__cm
#
JointGeometry.
radius__cm
:
float
#
On this page
JointGeometry.radius__cm
