Index _ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | Q | R | S | T | V _ __init__() (_Pool method) (AffIa__Pool method) (AffIb__Pool method) (AffII__Pool method) (AlphaMN__Pool method) (ContinuousSaver method) (DescendingDrive__Pool method) (ForceModel method) (GIb__Pool method) (GII__Pool method) (GolgiTendonOrganModel method) (HillModel method) (IntramuscularElectrodeArray method) (IntramuscularEMG method) (JointBiomechanics method) (JointDynamics method) (JointGeometry method) (Muscle method) (MuscleGeometry method) (Network method) (RecruitmentThresholds method) (SimulationRunner method) (SpindleModel method) (SurfaceElectrodeArray method) (SurfaceEMG method) _Pool (class in myogen.simulator.neuron.populations) A add_noise() (IntramuscularEMG method), [1] (SurfaceEMG method), [1] add_spike() (HillModel method), [1] AffIa__Pool (class in myogen.simulator.neuron.populations) AffIb__Pool (class in myogen.simulator.neuron.populations) AffII__Pool (class in myogen.simulator.neuron.populations) AlphaMN__Pool (class in myogen.simulator.neuron.populations) angle__deg (JointDynamics attribute) (JointDynamics property), [1] angle__rad (JointDynamics attribute) assign_mfs2mns() (Muscle method), [1] assignment (Muscle attribute) (Muscle property), [1] B bag1_activation (SpindleModel property), [1] bag2_activation (SpindleModel property), [1] C calc_observation_points() (IntramuscularElectrodeArray method), [1] center_coords (JointGeometry attribute), [1] chain_activation (SpindleModel property), [1] compute_joint_torque() (JointBiomechanics method), [1] compute_muscle_length() (JointBiomechanics method), [1] connect() (Network method), [1] connect_from_external() (Network method), [1] connect_one_to_one() (Network method), [1] connect_to_muscle() (Network method), [1] ContinuousSaver (class in myogen.utils.continuous_saver) contraction_times__samples (ForceModel attribute) (ForceModel property), [1] convert_chunks_to_neo() (in module myogen.utils.continuous_saver) CORTICAL_INPUT__MATRIX (in module myogen.utils.types) create_default_gto_parameters() (GolgiTendonOrganModel static method), [1] create_default_muscle_parameters() (HillModel static method), [1] create_default_spindle_parameters() (SpindleModel static method), [1] create_gto_parameters_for_muscle() (GolgiTendonOrganModel static method), [1] create_ramp_current() (in module myogen.utils.currents) create_sawtooth_current() (in module myogen.utils.currents) create_sinusoidal_current() (in module myogen.utils.currents) create_step_current() (in module myogen.utils.currents) create_trapezoid_current() (in module myogen.utils.currents) CURRENT__AnalogSignal (in module myogen.utils.types) D DescendingDrive__Pool (class in myogen.simulator.neuron.populations) differential_matrix (IntramuscularElectrodeArray attribute) (IntramuscularElectrodeArray property), [1] distribute_innervation_centers() (Muscle method), [1] E electrode_positions (IntramuscularElectrodeArray attribute) (IntramuscularElectrodeArray property), [1] (SurfaceElectrodeArray attribute) (SurfaceElectrodeArray property), [1] export_simulation_to_nwb() (in module myogen.utils.nwb) export_to_nwb() (in module myogen.utils.nwb) F F0 (HillModel property), [1] finalize() (ContinuousSaver method), [1] FORCE__AnalogSignal (in module myogen.utils.types) ForceModel (class in myogen.simulator) G generate_force() (ForceModel method), [1] generate_muscle_fiber_centers() (Muscle method), [1] get_biomechanical_summary() (JointBiomechanics method), [1] get_connections() (Network method), [1] get_H_sf() (SurfaceElectrodeArray method), [1] get_initialization_data() (_Pool method), [1] (AffIa__Pool method) (AffIb__Pool method) (AffII__Pool method) (AlphaMN__Pool method) (DescendingDrive__Pool method) (GIb__Pool method) (GII__Pool method) get_model_outputs() (SimulationRunner method), [1] get_moment_arm() (JointBiomechanics method), [1] get_muscle_length_trajectory() (JointBiomechanics method), [1] get_netcons() (Network method), [1] get_state() (JointDynamics method), [1] GIb__Pool (class in myogen.simulator.neuron.populations) GII__Pool (class in myogen.simulator.neuron.populations) GolgiTendonOrganModel (class in myogen.simulator.neuron.proprioception) H HillModel (class in myogen.simulator.neuron.muscle) I ib_afferent_firing__Hz (GolgiTendonOrganModel property), [1] initial_positions (IntramuscularElectrodeArray attribute) (IntramuscularElectrodeArray property), [1] inject_currents_and_simulate_spike_trains() (in module myogen.utils.neuron.inject_currents_into_populations) inject_currents_into_populations() (in module myogen.utils.neuron.inject_currents_into_populations) innervation_center_positions__mm (Muscle attribute) (Muscle property), [1] insertion_coords (MuscleGeometry attribute), [1] integrate() (GolgiTendonOrganModel method), [1] (HillModel method), [1] (JointDynamics method), [1] (SpindleModel method), [1] intrafusal_tensions (SpindleModel property), [1] INTRAMUSCULAR_EMG__Block (in module myogen.utils.types) intramuscular_emg__Block (IntramuscularEMG attribute) (IntramuscularEMG property), [1] INTRAMUSCULAR_MUAP__Block (in module myogen.utils.types) IntramuscularElectrodeArray (class in myogen.simulator) IntramuscularEMG (class in myogen.simulator) J JOINT_ANGLE__ARRAY (in module myogen.utils.types) joint_angles__deg (JointBiomechanics attribute) JointBiomechanics (class in myogen.simulator.core.force) JointDynamics (class in myogen.simulator.neuron.joint_dynamics) JointGeometry (class in myogen.simulator.core.force) L L0 (HillModel property), [1] load_nmodl_mechanisms() (in module myogen) M max_length_change__cm (MuscleGeometry attribute), [1] MOMENT_ARM__MATRIX (in module myogen.utils.types) moment_arms__cm (JointBiomechanics attribute) motor_unit_forces (HillModel property), [1] muaps__Block (IntramuscularEMG attribute) (IntramuscularEMG property), [1] (SurfaceEMG attribute) (SurfaceEMG property), [1] Muscle (class in myogen.simulator) muscle_acceleration (HillModel property), [1] muscle_border__mm (Muscle attribute) (Muscle property), [1] muscle_fiber_centers__mm (Muscle attribute) (Muscle property), [1] muscle_fiber_conduction_velocities__mm_per_s (Muscle attribute) (Muscle property), [1] muscle_fiber_diameters__mm (Muscle attribute) (Muscle property), [1] muscle_force (HillModel property), [1] muscle_length (HillModel property), [1] muscle_torque (HillModel property), [1] muscle_velocity (HillModel property), [1] MuscleGeometry (class in myogen.simulator.core.force) N n_muscles (JointBiomechanics attribute) n_nodes (IntramuscularElectrodeArray attribute) Network (class in myogen.simulator.neuron.network) noisy_intramuscular_emg__Block (IntramuscularEMG attribute) (IntramuscularEMG property), [1] noisy_surface_emg__Block (SurfaceEMG attribute) (SurfaceEMG property), [1] num_channels (IntramuscularElectrodeArray attribute) (IntramuscularElectrodeArray property), [1] (SurfaceElectrodeArray attribute) (SurfaceElectrodeArray property), [1] num_electrodes (SurfaceElectrodeArray attribute) num_points (IntramuscularElectrodeArray attribute) number_of_muscle_fibers (Muscle attribute) (Muscle property), [1] O optimal_length__cm (MuscleGeometry attribute), [1] origin_coords (MuscleGeometry attribute), [1] P peak_twitch_forces__unitless (ForceModel attribute) (ForceModel property), [1] plot_antagonist_muscle_comparison() (in module myogen.utils.plotting) plot_gto_dynamics() (in module myogen.utils.plotting) plot_membrane_potentials() (in module myogen.utils.plotting) plot_muscle_dynamics() (in module myogen.utils.plotting) plot_raster_spikes() (in module myogen.utils.plotting) plot_spindle_dynamics() (in module myogen.utils.plotting) pos_theta (SurfaceElectrodeArray attribute) (SurfaceElectrodeArray property), [1] pos_z (SurfaceElectrodeArray attribute) (SurfaceElectrodeArray property), [1] primary_afferent_firing__Hz (SpindleModel property), [1] print_network() (Network method), [1] Q Quantity__deg (in module myogen.utils.types) Quantity__Hz (in module myogen.utils.types) Quantity__m (in module myogen.utils.types) Quantity__m_per_s (in module myogen.utils.types) Quantity__mm (in module myogen.utils.types) Quantity__mm2 (in module myogen.utils.types) Quantity__mm_per_s (in module myogen.utils.types) Quantity__ms (in module myogen.utils.types) Quantity__mV (in module myogen.utils.types) Quantity__nA (in module myogen.utils.types) Quantity__per_mm2 (in module myogen.utils.types) Quantity__pps (in module myogen.utils.types) Quantity__rad (in module myogen.utils.types) Quantity__s (in module myogen.utils.types) Quantity__S_per_m (in module myogen.utils.types) Quantity__uS (in module myogen.utils.types) Quantity__uV (in module myogen.utils.types) R radius__cm (JointGeometry attribute), [1] RANDOM_GENERATOR (in module myogen) range_of_motion__degrees (JointGeometry attribute), [1] record_spike() (ContinuousSaver method), [1] record_step() (ContinuousSaver method), [1] recruitment_thresholds (Muscle property), [1] RECRUITMENT_THRESHOLDS__ARRAY (in module myogen.utils.types) RecruitmentThresholds (class in myogen.simulator) reset() (JointDynamics method), [1] resulting_fiber_assignment() (Muscle method), [1] resulting_innervation_areas__mm2 (Muscle attribute) (Muscle property), [1] resulting_number_of_innervated_fibers (Muscle attribute) (Muscle property), [1] rodrigues_rot() (IntramuscularElectrodeArray method), [1] rotate_and_translate() (IntramuscularElectrodeArray method), [1] rt (RecruitmentThresholds attribute), [1] rtz (in module myogen.simulator) (RecruitmentThresholds attribute) run() (SimulationRunner method), [1] S secondary_afferent_firing__Hz (SpindleModel property), [1] SEED (in module myogen) set_linear_trajectory() (IntramuscularElectrodeArray method), [1] set_model_outputs() (SimulationRunner method), [1] set_position() (IntramuscularElectrodeArray method), [1] set_random_seed() (in module myogen) setup_spike_recording() (Network method), [1] signed_muscle_torque (HillModel property), [1] simulate_intramuscular_emg() (IntramuscularEMG method), [1] simulate_muaps() (IntramuscularEMG method), [1] (SurfaceEMG method), [1] simulate_surface_emg() (SurfaceEMG method), [1] SimulationRunner (class in myogen.simulator.neuron.simulation_runner) SPIKE_TRAIN__Block (in module myogen.utils.types) spike_train__Block (IntramuscularEMG attribute) (IntramuscularEMG property), [1] (SurfaceEMG attribute) (SurfaceEMG property), [1] SpindleModel (class in myogen.simulator.neuron.proprioception) SURFACE_EMG__Block (in module myogen.utils.types) surface_emg__Block (SurfaceEMG attribute) (SurfaceEMG property), [1] SURFACE_MUAP__Block (in module myogen.utils.types) SurfaceElectrodeArray (class in myogen.simulator) SurfaceEMG (class in myogen.simulator) T time_vector (HillModel property), [1] (SpindleModel property), [1] traj_mixing_fun() (IntramuscularElectrodeArray method), [1] traj_mixing_mat() (IntramuscularElectrodeArray method), [1] trajectory_transforms (IntramuscularElectrodeArray attribute) (IntramuscularElectrodeArray property), [1] twitch_list (ForceModel attribute) (ForceModel property), [1] twitch_mat (ForceModel attribute) (ForceModel property), [1] type1_activation (HillModel property), [1] type2_activation (HillModel property), [1] V validate_nwb() (in module myogen.utils.nwb) velocity__rad_per_s (JointDynamics attribute)
