Examples#

This collection of examples demonstrates the complete MyoGen simulation pipeline, from basic motor unit recruitment to advanced EMG signal generation.

Workflow#

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 }}%%

flowchart TD
     S((Start))
     A["Recruitment<br/>Thresholds"]

     B["Injected Current"]
     C["Cortical Input"]

     D["Muscle Model"]

     E["Surface MUAPs"]
     F["Surface EMG"]
     G["Intramuscular EMG"]
     J["Intramuscular MUAPs"]

     %% Column 4: Independent Utilities
     H["Current Generation"]
     I["Force Model"]

     subgraph neural_drive ["<b>⚡ Neural Drive</b>"]
         B
         C
     end

     subgraph utilities ["<b>🔧 Utilities</b>"]
         H
     end

     subgraph physiology ["<b>💪 Anatomy Model</b>"]
         S --> A --> D & I
     end

     subgraph emg ["<b>📊 EMG Generation</b>"]
         direction TB
         E --> F
         J --> G
     end


     H --> neural_drive
     D --> emg

     neural_drive --> emg

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     classDef physiology fill:#fef3c7,stroke:#d97706,stroke-width:2px,color:#92400e
     classDef emg fill:#d1fae5,stroke:#059669,stroke-width:2px,color:#064e3b
     classDef utility fill:#fee2e2,stroke:#dc2626,stroke-width:2px,color:#991b1b
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     class S start
     class A foundation
     class B,C neural
     class D,I physiology
     class E,F,G,J emg
     class H utility

     %% Subgraph styling
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     style utilities fill:#fef2f2,stroke:#ef4444,stroke-width:2px,stroke-dasharray: 5 5
     style physiology fill:#fffbeb,stroke:#f59e0b,stroke-width:2px,stroke-dasharray: 5 5
     style emg fill:#ecfdf5,stroke:#10b981,stroke-width:2px,stroke-dasharray: 5 5

     %% Clickable links
     click A "00_simulate_recruitment_thresholds.html"
     click B "01_simulate_spike_trains.html"
     click C "07_simulate_cortical_input.html"
     click D "02_simulate_muscle.html"
     click E "03_simulate_surface_muaps.html"
     click F "04_simulate_surface_emg.html"
     click J "08_simulate_intramuscular_emg.html"
     click G "08_simulate_intramuscular_emg.html"
     click H "05_simulate_currents.html"
     click I "06_simulate_force.html"

Click any box to navigate to that example#